This report is generated by Quarto on June 10, 2025
Introduction
This report demonstrates results of the conducted analysis for
proteomics at STC1.
Minor allele frequency of variants
Variants annotation plot
Discriptive statistics
Minimum allele count (AC) is set to 5 . Given 13447 samples, variants
with AC below 5 and above 13442 are removed., , , Of 165 variants, 114
left with minor allele count > 5 for building haplotypes., , , Merged
data comprised 114 variants, 149 traits, and 13 covariates.,
Haplotype plot
Haplotype tagging variants
Associations with proteomics
Ci0tLQp0aXRsZTogIkhhcGxvbWljcyByZXBvcnQgZm9yIGByIHBhcmFtcyRBU1NBWWAgYXQgKmByIHBhcmFtcyRMT0NVU2AqLiIKcGFyYW1zOgogIGRhdGU6ICFyIFN5cy5EYXRlKCkKICBMT0NVUzogIiIKICBBU1NBWTogIiIKICBoaXN0OiAiIgogIGFub3Q6ICIiCiAgaGFwMTogIiIKICBoYXAyOiAiIgogIGhlYXQ6ICIiCiAgcmVzOiAgIiIKICBzdW1tOiAiIgoKZXhlY3V0ZToKICBjYWNoZTogZmFsc2UKICBmcmVlemU6IGF1dG8gICMgb3B0aW9uYWwsIGRpc2FibGVzIHJldXNlIG9mIG9sZCBrbml0Lm1kIGlmIGluIGEgd29ya2Zsb3cKb3V0cHV0OiAKICBodG1sX25vdGVib29rOgogICAgdGhlbWU6IGpvdXJuYWwgI3VuaXRlZCAjZmxhdGx5CiAgICAjaGlnaGxpZ2h0OiAjZXNwcmVzc28gI3RhbmdvIAogICAgdG9jOiBUUlVFCiAgICB0b2NfZGVwdGg6IDUKICAgIHRvY19mbG9hdDogCiAgICAgIGNvbGxhcHNlZDogVFJVRQogICAgICBzbW9vdGhfc2Nyb2xsOiBUUlVFCiAgICAgIG51bWJlcl9zZWN0aW9uczogRkFMU0UKZm9ybWF0OiAKICByZXZlYWxqczoKICAgIHRyYW5zaXRpb246IHNsaWRlLAogICAgYmFja2dyb3VuZC10cmFuc2l0aW9uOiBmYWRlCmVkaXRvcjogdmlzdWFsCmdlb21ldHJ5OiBtYXJnaW49MC45NWluCi0tLQoKVGhpcyByZXBvcnQgaXMgZ2VuZXJhdGVkIGJ5IFF1YXJ0byBvbiBgciBmb3JtYXQoU3lzLkRhdGUoKSwgIiVCICVkLCAlWSIpYAoKCmBgYHtyIHNldHVwLCBpbmNsdWRlPUZBTFNFfQprbml0cjo6b3B0c19jaHVuayRzZXQoZWNobyA9IFRSVUUpCmBgYAoKYGBge3IgcGFja2FnZXMsIGluY2x1ZGU9RkFMU0V9CgojIExvYWRpbmcgbGlicmFyaWVzCmxpYnJhcnkoa25pdHIpCmxpYnJhcnkocm1hcmtkb3duKQpsaWJyYXJ5KHRpZHl2ZXJzZSkKbGlicmFyeShEVCkKCiNsaWJyYXJ5KGNvd3Bsb3QpCiNsaWJyYXJ5KGdncGxvdDIpCmBgYAoKfAp8CnwKCiMjIyBJbnRyb2R1Y3Rpb24KVGhpcyByZXBvcnQgZGVtb25zdHJhdGVzIHJlc3VsdHMgb2YgdGhlIGNvbmR1Y3RlZCBhbmFseXNpcyBmb3IgYHIgcGFyYW1zJEFTU0FZYCBhdCAqYHIgcGFyYW1zJExPQ1VTYCouCgp8CnwKfAoKIyMjIE1pbm9yIGFsbGVsZSBmcmVxdWVuY3kgb2YgdmFyaWFudHMKCmBgYHtyIE1BRiwgZWNobz1GQUxTRSwgZmlnLmFsaWduID0gImNlbnRlciIsIG91dC53aWR0aD0nNzAlJywgZmlnLmNhcD0iRmlndXJlIDEuIEFsbGVsZSBmcmVxdWVuY3kgb2YgdGhlIHZhcmlhbnRzIiwgZmlnLnN1YmNhcD1jKCdhJywnYicsICdjJyl9Cgprbml0cjo6aW5jbHVkZV9ncmFwaGljcyhwYXJhbXMkaGlzdCkKYGBgCgp8CnwKfAoKCiMjIyBWYXJpYW50cyBhbm5vdGF0aW9uIHBsb3QKCmBgYHtyIGFubm90YXRpb24sIGVjaG89RkFMU0UsIGZpZy5hbGlnbj0iY2VudGVyIiwgb3V0LndpZHRoPSc4MCUnLCBmaWcuY2FwPSJGaWd1cmUgMi4gTnVtYmVyIGFuZCBhbm5vdGF0aW9uIG9mIHRoZSB2YXJpYW50cyBpbiBlYWNoIGdlbmUifQoKa25pdHI6OmluY2x1ZGVfZ3JhcGhpY3MocGFyYW1zJGFub3QpCmBgYAoKfAp8CnwKCiMjIyMgRGlzY3JpcHRpdmUgc3RhdGlzdGljcyAKCgpgYGB7ciBzdW1tYXJ5IG9mIHRoZSBkYXRhc2V0cywgZWNobz1GQUxTRSwgbWVzc2FnZT1GQUxTRSwgd2FybmluZz1UUlVFfQoKI2RhdGFfc3VtbSA8LSByZWFkLmRlbGltKGZpbGUgPSBwYXJhbXMkc3VtbSwgaGVhZGVyID0gVFJVRSwgc2VwID0gIlx0IiwgY29tbWVudC5jaGFyID0gIiIpCgojZGF0YV9zdW1tICU+JSBrbml0cjo6a2FibGUoInBpcGUiLCBjYXB0aW9uID0gIlRhYmxlIDEuIERpc2NyaXB0aXZlIHN0YXRpc3RpY3Mgb2YgbWVyZ2VkIGRhdGFzZXRzIikKCiMgUmVhZCByZXBvcnQgZnJvbSBmaWxlCnJlcG9ydF9jb250ZW50cyA8LSByZWFkTGluZXMocGFyYW1zJHN1bW0pCgojIFByaW50IHJlcG9ydCB0byBjb25zb2xlCiNjYXQocmVwb3J0X2NvbnRlbnRzLCBzZXAgPSAiXG4iKQoKYGBgCmByIHJlcG9ydF9jb250ZW50c2AKCnwKfAp8CgojIyMgSGFwbG90eXBlIHBsb3QgCgojIyMjIEhhcGxvdHlwZSB2YXJpYW50cwoKYGBge3IgaGFwbG90eXBlcywgZmlndXJlcy1zaWRlLCBlY2hvPUZBTFNFLCBmaWcuc2hvdz0iaG9sZCIsIGZpZy5hbGlnbj0iY2VudGVyIiwgb3V0LndpZHRoPScxMDAlJywgZmlnLmNhcD0iRmlndXJlIDMuIEFsbGVsZXMgZGlzdHJpYnV0aW9uIGFjcm9zcyBoYXBsb3R5cGVzIn0KCmtuaXRyOjppbmNsdWRlX2dyYXBoaWNzKHBhcmFtcyRoYXAxKQpgYGAKCnwKfAp8CgojIyMjIEhhcGxvdHlwZSB0YWdnaW5nIHZhcmlhbnRzCgpgYGB7ciBoYXBsb3R5cGVzIG5hcnJvd2VkLCBmaWd1cmVzLXNpZGUsIGVjaG89RkFMU0UsIGZpZy5zaG93PSJob2xkIiwgZmlnLmFsaWduPSJjZW50ZXIiLCBvdXQud2lkdGg9JzEwMCUnLCBmaWcuY2FwPSJGaWd1cmUgNC4gSGFwbG90eXBlcyBuYXJyb3dlZCBieSB2YXJpZWQgdmFyaWFudHMifQoKa25pdHI6OmluY2x1ZGVfZ3JhcGhpY3MocGFyYW1zJGhhcDIpCmBgYAoKfAp8CnwKCiMjIyBBc3NvY2lhdGlvbnMgd2l0aCBgciBwYXJhbXMkQVNTQVlgCgojIyMjIEhlYXRtYXAgcGxvdAoKYGBge3IgaGVhdG1hcCB0cmFpdHMsIGVjaG89RkFMU0UsIGZpZy5hbGlnbj0iY2VudGVyIiwgb3V0LndpZHRoPScxMDAlJywgZmlnLmNhcD0iRmlndXJlIDUuIEhlYXRtYXAgcGxvdCBvZiB0aGUgYXNzb2NpYXRpb25zIGNvZWZmaWNpZW50cyJ9Cgprbml0cjo6aW5jbHVkZV9ncmFwaGljcyhwYXJhbXMkaGVhdCkKYGBgCgp8CnwKfAoKIyMjIyBUYWJsZSBvZiByZXN1bHRzCgpgYGB7ciBzaWduaWZpY2FudCByZXN1bHRzIHRyYWl0cywgZWNobz1GQUxTRSwgbWVzc2FnZT1GQUxTRSwgd2FybmluZz1UUlVFfQoKcmVzdWx0IDwtIHJlYWRSRFMocGFyYW1zJHJlcykKCiMgc2hvdyB0aGUgcmVzdWx0cwpyZXN1bHQgJT4lIERUOjpkYXRhdGFibGUoY2FwdGlvbiA9ICJUYWJsZSAxLiBSZXN1bHRzIG9mIGhhcGxvdHlwZSBhc3NvY2lhdGlvbiIpCmBgYAoKfAp8CnwK